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by Admin last modified 2008-10-30 08:21

Program to perform simple manipulations on image files

C*LABEL.FOR********************************************************************
C                                                                             *
C       Program to perform simple manipulations on image files                *
C                                                                             *
C       Version 1.12    31-MAR-82    DAA        for VAX                       *
C       Version 1.13    13-OCT-82    DAA        for VAX                       *
C       Version 1.14    7- JAN-85    MK         some more routines            *
C                                               for nicer displays            *
C       Version 1.15    20-APR-85    RH         line size 8192                *
C       Version 1.16    12-JUN-87    RH         extra option                  *
C       Version 1.17    06-FEB-92    RH         max/min/mean on option 4      *
C       Version 1.18    26-MAR-92    RH         transfer "extra" data         *
C       Version 1.20    07-OCT-95    RH         increased dimensions          *
C       Version 1.21    17-DEC-96    RH         new single particle option 50 *
C       Version 1.22    01-JAN-97    RH         clean up new option           *
C       Version 1.23    01-SEP-98    RH         remove title option 50 I/P    *
C       Version 1.H1    01-FEB-03    HST        more transforming options     *
C******************************************************************************
C
C Input is a single file in mapformat, output is a single file in mapformat
C
C      Card input, or online control
C
C        card  1 :  input filename
C        card  2 :  IMODE, describes which of the various simple manipulations
C                are required - can be -2,-1,0,1,2,3,4 or 99 for images
C                                      as well as 5,6,7,8 for transforms.
C                If IMODE is 50, single particle boxing and restacking option
C                If IMODE is 99, a second IMODE of 1,2,3,4 gives more options
C                                      and 5,6,7,8 more options for transforms.
C        card  3 :  output filename
C        cards 4 onwards are dependent on manipulation - see below
C -------------------------------------------------------------------------
C IMODE= -3: Change to BYTE output format with automatic scaling',/,
C
C IMODE= -2: Change INTEGER*2/INTEGER*1 output format',/,
C        card  4 : SCALE, scale factor for INTEGER*2/BYTE conversion
C
C IMODE= -1: Change REAL/INTEGER*2 output format',/,
C        card  4 : SCALE, scale factor for REAL/INTEGER conversion
C
C IMODE=  0: Change Labels',/,
C        card  4 : NLA, number of labels to ADD ?  (can be negative)
C        cards 5 : TITLE,  enter titles to add for label number #
C     or card  5 : NLR, remove labels # (0 to exit) ? 
C
C IMODE=  1: Select region',/,
C        card  4 : enter Limits (Xmin,max,Ymin,max) if NZ=1
C     or card  4 : enter Limits (Xmin,max,Ymin,max,Zmin,max) if NZ>1
C
C IMODE=  2: Linear OD stretch  ( y = mx + b )',/,
C        card  4 : A,B enter coefficients A & B ( Y = AX + B )
C        card  5 : IQ=0 or 1 - set values <0 to 0  (0= no, 1=yes) ?
C
C IMODE=  3: Logrithmic  OD stretch ( y = aLOGx + b )',/,
C        card  4 : A,B enter coefficients A & B ( Y = A*ALOG(X) + B )
C
C IMODE=  4: Average adjacent pixels',/,
C        card  4 : NREDX,NREDY enter integer reduction factor for X,Y:
C
C IMODE=  5: Output amplitudes or Intensities',/,
C        card  4 : IQ, write out amplitudes (0) or Intensities*.01 (1) ?
C
C IMODE=  6: Output Phases (degrees)',/,
C        no further input needed
C
C IMODE=  7: Output REAL part of Complex value',/,
C        no further input needed
C
C IMODE=  8: Output IMAGINARY part of Complex value',/)
C        no further input needed
C
C IMODE= 10: Transform 16 bit linear transmission into 16 bit OD
C
C IMODE= 11: Transform 16 bit linear transmission into 8 bit OD
C
C IMODE= 12: Fix STEM images for IMOD
C
C IMODE= 20: Produce thumbnail image
C        card 4 : Enter X/Y dimensions of output image
C
C -----------------------------------------------------------
C IMODE= 50: goes to the single particle selection option, with input
C            from a file of X,Y coordinates, and desired box size.
C        card  4 : NBOXX,NBOXY
C        card  5 : input filename for the list of X,Y coordinates of
C                  the centres of the areas to be selected.
C -----------------------------------------------------------
C IMODE= 99: More options, mainly for display purposes')
C      then asks for a second IMODE
C
C IMODE=  1: VARIOUS 90 DEG TURNS AND MIRRORS',/,
C        card  4 : ITURN, TURN NO? (1:Z90,2:Z-90,3:Z180,4:Xmir,5:Ymir)
C
C IMODE=  2: GEOMETRIC STRETCH ( y = m**X )',/,
C        card  4 : A, enter A (Y = X**A)
C
C IMODE=  3: CUT OFF OVER - AND UNDERFLOWS',/,
C        card  4 : A,B enter LOWEST AND HIGHEST VALUE TO PRUNE IMAGE WITH
C
C IMODE=  4: GET RID OF OUTLIERS BY INTERPOLATION')
C        card  4 : critdiff, enter critical difference
C
C****************************************************************************

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